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SRX4907713: GSM3438786: Sample5: Low-fat-female; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29.2M spots, 1.5G bases, 1Gb downloads

Submitted by: NCBI (GEO)
Study: Effect of high-fat diet on hepatic gene expression in SM/J mice
show Abstracthide Abstract
We identified 4,356 genes with expression differences associated with a high-fat diet, with 184 genes exhibiting a sex-by-diet interaction. Dietary fat dysregulated several pathways, such as cytokine-cytokine receptor interaction, chemokine signaling, and oxidative phosphorylation. Grant: Funding source: American Heart Association Grant number: 16PRE26420105 Title: The effect of maternal over-nutrition on obesity, epigenetics, and gene expression Awarded to Madeline Keleher Overall design: We performed RNA-seq in 21 total libraries, each with two mice of the same sex and diet pooled together (There were 6 low-fat-fed female libraries, 5 libraries of high-fat-fed females, 5 libraries of low-fat-fed males, and 5 libraries of high-fat-fed males). A 1x50 single read sequencing run was done on an Illumina HiSeq 2500 machine (Illumina Inc.)
Sample: Sample5: Low-fat-female
SAMN10261077 • SRS3953808 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using a Qiagen RNeasy kit RNA libraries were prepared using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3438786
Links:
Runs: 1 run, 29.2M spots, 1.5G bases, 1Gb
Run# of Spots# of BasesSizePublished
SRR808057529,244,7741.5G1Gb2018-11-26

ID:
6609073

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